If you are running a reasonably recent version of cPanel (I think v11 or later), you have the ability to run WHM backups over rsync instead of just FTP. This post, if it isn’t obvious, is intended for people with root access to their cPanel server.
So how do you do this?
Simple, configure the backups as per normal in WHM to backup your secondary hard drive or a set partition on your main hard drive. Then just add a script via the shell command line as “/scripts/postcpbackup” (open PuTTY, connect to the server, login, “su” to root if necessary if you didn’t login as root, type “nano -w /scripts/postcpbackup”) and past the following script:
rsync -vrplogDth /backup/cpbackup/* username@backupserver:/backuplocation/
Replacing “/backup/cpbackup/” with the location of your “local backups” if you changed it from the default, “username” with the username of your rSync account, “backupserver” with the hostname/IP address of the backup server and “backuplocation” of the place to store the backups. (It’s CTRL+X to exit nano by the way).
You then just need to make it executable by running “chmod a+x /scripts/postcpbackup” and you are done!
Hope it helps someone!